Ok.
First, install Fleet Ops V3PR on an XP computer. That means use the official patch, the media patch, and the actual game.
Second, copy the Star Trek folder with Fleet Ops and paste it to your vista computer in your My Documents using a flash disk or cd or LAN. Don't put it in your program files (UAC will be engaged and make it not work)
Third, download the zip from the first page, first post, of this thread and extract.
Fourth, delete .map from your star trek folder and replace with .mad and also add that other file from the extracted zip (a grand total of two files)
Fifth, play

I hope that's good enough

Sorry to break the news, but there is no Borg in this version, only in the upcoming release (sorry if you already knew that though

)